| [1] |
Crane P R,Friis E M,Pedersen K R. The origin and early diversification of angiosperms[J].Nature, 1995, 374(6517): 27-33.
|
| [2] |
Schneider H,Schuettpelz E,Pryer K M,Cranfill R,Magallon S,Lupia R. Ferns diversified in the sha-dow of angiosperms[J].Nature, 2004, 428(6982): 553-557.
|
| [3] |
Page C N. Ecological strategies in fern evolution:a neopteridological overview[J].Rev Palaeobot Palyno, 2002, 119(1-2): 1-33.
|
| [4] |
孙瑞雪,杨春虹.光系统Ⅱ的结构与功能以及光合膜对环境因素的响应机制[J].生物物理学报, 2012, 28(7): 537-548.
|
| [5] |
Shi L X,Hall M,Funk C,Schroder W P. Photosystem Ⅱ,a growing complex:updates on newly discovered components and low molecular mass proteins[J].Biochim Biophys Acta, 2012, 1817: 13-25.
|
| [6] |
Marder J B,Chapman D J,Telfer A,Nixon P J,Barber J. Identification of psbA and psbD Gene-Pro-ducts,D1 and D2,as reaction center proteins of photosystem-2[J].Plant Mol Biol, 1987, 9(4): 325-333.
|
| [7] |
Diner B A,Rappaport F. Structure,dynamics,and energetics of the primary photochemistry of photosystem Ⅱ of oxygenic photosynthesis[J].Annu Rev Plant Biol, 2002, 53: 551-580.
|
| [8] |
Yang Z,Bielawski J P.Statistical methods for detecting molecular adaptation[J].Trends Ecol Evol, 2000, 15(12): 496-503.
|
| [9] |
Süel G M,Lockless S W,Wall M A,Ranganathan R.Evolutionarily conserved networks of residues mediate allosteric communication in proteins[J].Nature Struct Biol, 2002, 10: 59-69.
|
| [10] |
吕品一,郑珩,劳兴珍.蛋白质共进化分析研究进展[J].生物信息学, 2010(1): 34-37.
|
| [11] |
Fares M A.Computational and statistical methods to explore the various dimensions of protein evolution[J].Current Bioinformatics, 2006, 1(2): 207-217.
|
| [12] |
Smith A R,Pryer K M,Schuettpelz E,Korall P,Schneider H,Wolf P G. A classification for extant ferns[J].Taxon, 2006, 55(3): 705-731.
|
| [13] |
刘红梅,王丽,张宪春,曾辉.石松类和蕨类植物研究进展: 兼论国产类群的科级分类系统[J].植物分类学报, 2008, 46(6): 808-829.
|
| [14] |
Edgar R C.MUSCLE:a multiple sequence alignment method with reduced time and space complexity[J].BMC Bioinformatics, 2004, 5: 113.
|
| [15] |
Posada D,Crandall K. Modeltest: testing the model of DNA substitution[J].Bioinformatics, 1998, 14(9): 817-818.
|
| [16] |
Ronquist F,Teslenko M,Van Der Mark P,Ayres D L,Darling A,Hohna S,Larget B,Liu L,Suchard M A,Huelsenbeck J P. MrBayes 3.2:Efficient baye-sian phylogenetic inference and model choice across a large model space[J].Syst Biol, 2012, 61(3): 539-542.
|
| [17] |
Rambaut A,Drummond A. Tracer v1.5[CP].http://tree.bio.ed.ac.uk/software/tracer/[2009-11-30].
|
| [18] |
Yang Z H. PAML 4: Phylogenetic analysis by maximum likelihood[J].Mol Biol Evol, 2007, 24(8): 1586-1591.
|
| [19] |
Yang Z H. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution[J].Mol Biol Evol, 1998, 15(5): 568-573.
|
| [20] |
Nielsen R,Yang Z H. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene[J].Genetics, 1998, 148(3): 929-936.
|
| [21] |
Zhang J Z,Nielsen R,Yang Z H. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level[J].Mol Biol Evol, 2005, 22(12): 2472-2479.
|
| [22] |
Stern A,Doron-Faigenboim A,Erez E,Martz E,Bacharach E,Pupko T.Selecton 2007:advanced models for detecting positive and purifying selection using a Bayesian inference approach[J].Nucleic Acids Res, 2007, 35: 506-511.
|
| [23] |
Delport W,Poon A F Y,Frost S D W,Pond S L K.Datamonkey 2010:a suite of phylogenetic analysis tools for evolutionary biology[J].Bioinformatics, 2010, 26(19): 2455-2457.
|
| [24] |
Göbel U,Sander C,Schneider R,Valencia A. Correlated mutations and residue contacts in proteins[J].Protein:Struct Funct Genet, 1994, 18(4): 309-317.
|
| [25] |
Pollock D D,Taylor W R,Goldman N.Coevolving protein residues:maximum likelihood identification and relationship to structure[J].J Mol Biol, 1999, 287(1): 187-198.
|
| [26] |
Martin L,Gloor G,Dunn S,Wahl L. Using information theory to search for co-evolving residues in proteins[J].Bioinformatics, 2005, 21(22): 4116-4124.
|
| [27] |
Fares M A,Mcnally D. CAPS:coevolution analysis using protein sequences[J].Bioinformatics, 2006, 22(22): 2821-2822.
|
| [28] |
Poon A F,Lewis F I,Frost S D,Pond S L K. Spidermonkey:rapid detection of co-evolving sites using Bayesian graphical models[J].Bioinformatics, 2008, 24(17): 1949-1950.
|
| [29] |
Gouveia-Oliveira R,Roque F S,Wernersson R,Sicheritz-Ponten T,Sackett P W,Molgaard A,Pe-dersen A G.InterMap3D: predicting and visualizing co-evolving protein residues[J].Bioinformatics, 2009, 25(15): 1963-1965.
|
| [30] |
Pryer K M,Schuettpelz E,Wolf P G,Schneider H,Smith A R,Cranfill R.Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences[J].Am J Bot, 2004, 91(10): 1582-1598.
|
| [31] |
Rothfels C J,Windham M D,Grusz A L,Gastony G J,Pryer K M.Toward a monophyletic Notholaena (Pteridaceae):resolving patterns of evolutionary convergence in xeric-adapted ferns[J].Taxon, 2008, 57(3): 712-724.
|
| [32] |
Schuettpelz E,Pryer K M. Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy[J].Proc Natl Acad Sci USA, 2009, 106(27): 11200-11205.
|
| [33] |
Korall P,Schuettpelz E,Pryer K M. Abrupt deceleration of molecular evolution linked to the origin of arborescence in ferns[J].Evolution, 2010, 64(9): 2786-2792.
|
| [34] |
Wikstrom N,Pryer K M. Incongruence between primary sequence data and the distribution of a mitochondrial atp1 group Ⅱ intron among ferns and horsetails[J].Mol Phylogenet Evol, 2005, 36(3): 484-493.
|
| [35] |
Windisch P G,Pereira-Noronha M. Notes on the ecology and development of Plagiogyria fialhoi[J].Am Fern J, 1983: 79-84.
|
| [36] |
Smith S A,Donoghue M J. Rates of molecular evolution are linked to life history in flowering plants[J].Science, 2008, 322(5898): 86-89.
|
| [37] |
Wang T,Su Y,Li Y. Population genetic variation in the tree fern Alsophila spinulosa (Cyatheaceae):effects of reproductive strategy[J].Plos One, 2012, 7(7): e41780.
|
| [38] |
Umena Y,Kawakami K,Shen J R,Kamiya N. Crystal structure of oxygen-evolving photosystem Ⅱ at a resolution of 1.9 [J].Nature, 2011, 473(7345): 55-60.
|
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