| Citation: |
Wang Jie, Wei Ai-Li, Shi Ying, Li Yan-Hui, Han Yu-Xin, Wang Zhong-Jie. Adaptive evolutionary analysis of hetR gene in Nostoc[J]. Plant Science Journal, 2020, 38(1): 23-31. DOI: 10.11913/PSJ.2095-0837.2020.10023
|
| [1] |
McGregor GB. Freshwater cyanobacteria of north-eastern Australia:3. Nostocales[J]. Phytotaxa, 2018, 359(1):1.
|
| [2] |
Williams W, Büdel B, Williams S. Wet season cyanobacterial N enrichment highly correlated with species richness and Nostoc in the northern Australian savannah[J]. Biogeosciences, 2018, 15(7):2149-2159.
|
| [3] |
Nowruzi B, Haghighat S, Fahimi H, Mohammadi E. Nostoc cyanobacteria species:a new and rich source of novel bioactive compounds with pharmaceutical potential[J]. Journal of Pharmaceutical Health Services Research, 2017, 9:5-12.
|
| [4] |
Muro-Pastor AM, Hess WR. Heterocyst differentiation:from single mutants to global approaches[J]. Trends Microbiol, 2012, 20(11):548-557.
|
| [5] |
Leganés F, Fernández-Pinas F, Wolk CP. Two mutations that block heterocyst differentiation have different effects on akinete differentiation in Nostoc ellipsosporum[J]. Mol Microbiol, 1994, 12(4):679-684.
|
| [6] |
Nei M, Kunar S. Molecular Evolution and Phylogenetics[M]. New York:Oxford University Press, 2000.
|
| [7] |
森林, 苏应娟, 张冰, 王艇. 凤尾蕨科植物rbcL基因的适应性进化分析[J]. 热带亚热带植物学报, 2010, 18(1):1-8.
Sen L, Su YJ, Zhang B, Wang T. Adaptive evolution of the rbcL gene in Pteridaceous ferns[J]. Journal of Tropical and Subtropical Botany, 2010, 18(1):1-8.
|
| [8] |
周媛, 王博, 高磊, 王艇. 凤尾蕨科旱生蕨类rbcL基因的适应性进化和共进化分析[J]. 植物科学学报, 2011, 29(4):409-416.
Zhou Y, Wang B, Gao L, Wang T. Adaptive evolution and coevolution of the rbcL gene in xeric Pteridaceae ferns[J]. Plant Science Journal, 2011, 29(4):409-416.
|
| [9] |
陈晓霞, 苏应娟, 王艇. 细鳞苔科psbA基因的适应性进化分析[J]. 西北植物学报, 2010, 30(8):1534-1544.
Chen XX, Su YJ, Wang T. Adaptive evolution analysis of the psbA gene in Lejeuneaceae[J]. Acta Botanica Boreali-Occidentalia Sinica, 2010, 30(8):1534-1544.
|
| [10] |
许可, 王博, 苏应娟, 高磊, 王艇. 蕨类植物psbD基因的适应性进化和共进化分析[J]. 植物科学学报, 2013, 31(5):429-438.
Xu K, Wang B, Su YJ, Gao L, Wang T. Molecular evolution of psbD gene in ferns:selection pressure and co-evolutionary analysis[J]. Plant Science Journal, 2013, 31(5):429-438.
|
| [11] |
吴筱娉, 森林, 陈楠, 张潇, 马朝霞, 张钦宇. 蕨类植物psaA 基因的分子进化研究[J]. 植物科学学报, 2017, 35(2):177-185.
Wu XP, Sen L, Chen N, Zhang X, Ma ZX, Zhang QY. Study on the molecular evolution of the psaA gene from ferns[J]. Plant Science Journal, 2017, 35(2):177-185.
|
| [12] |
巩超彦, 南芳茹, 冯佳, 吕俊平, 刘琪, 谢树莲. 串珠藻目植物rbcL基因的适应性进化分析[J]. 海洋与湖沼, 2017, 48(3):527-535.
Gong CY, Nan FR, Feng J, Lü JP, Liu Q, Xie SL. Adaptive evolutionary analysis on rbcL gene of Batrachospermales[J]. Oceanologia et Limnologia Sinica, 2017, 48(3):527-535.
|
| [13] |
韩雨昕, 南芳茹, 巩超彦, 冯佳, 吕俊平, 等. 弯枝藻属rbcL基因的适应性进化分析[J]. 热带亚热带植物学报, 2019, 27(1):36-44.
Han YX, Nan FR, Gong CY, Feng J, Lü JP, et al. Adaptive evolutionary analysis of the rbcL gene from Compsopogon (Rhodophyta)[J]. Journal of Tropical and Subtropical Botany, 2019, 27(1):36-44.
|
| [14] |
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6:molecular evolutionary genetics analysis version 6.0[J]. Mol Biol Evol, 2013, 30(12):2725-2729.
|
| [15] |
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies:assessing the perfor-mance of PhyML 3.0[J]. Syst Biol, 2010, 59(3):307-321.
|
| [16] |
Posada D, Buckley TR. Model selection and model averaging in phylogenetics:advantages of akaike information criterion and bayesian approaches over likelihood ratio tests[J]. Syst Biol, 2004, 53(5):793-808.
|
| [17] |
Yang ZH. PAML 4:phylogenetic analysis by maximum likelihood[J]. Mol Biol Evol, 2007, 24(8):1586-1591.
|
| [18] |
Chenna R, Sugawara H, Koike T, Lopez R, Gibson TJ, et al. Multiple sequence alignment with the Clustal series of programs[J]. Nucleic Acids Res, 2003, 31(13):3497-3500.
|
| [19] |
Hall TA. BioEdit:a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT[J]. Nucleic Acids Symp Ser, 1999, 41:95-98.
|
| [20] |
Sayle RA, Milner-White EJ. RASMOL:biomolecular grap-hics for all[J]. Trends Biochem Sci, 1995, 20(9):374-376.
|
| [21] |
Wang B, Su YJ, Wang T. Molecular cloning of rbcS genes in Selaginella and the evolution of the rbcS gene family[J]. Arch Biol Sci, 2015, 67(2):373-383.
|
| [22] |
Yang ZH. Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution[J]. Mol Biol Evol, 1998, 15(5):568-573.
|
| [23] |
Yang ZH. Computational molecular evolution[M]. New York:Oxford University Press, 2006.
|
| [24] |
Yang ZH. Inference of selection from multiple species alignments[J]. Curr Opin Genet Dev, 2002, 12(6):688-694.
|
| [25] |
Yang ZH, Bielawski JP. Statistical methods for detecting molecular adaptation[J]. Trends Ecol Evol, 2000, 15(12):496-503.
|
| [26] |
Yang ZH, Nielsen R, Goldman N, Pedersen AM. Codon-substitution models for heterogeneous selection pressure at amino acid sites[J]. Genetics, 2000, 155(1):431-449.
|
| [27] |
Zhang JZ. Frequent false detection of positive selection by the likelihood method with branch-site models[J]. Mol Biol Evol, 2004, 21(7):1332-1339.
|
| [28] |
Zhang JZ, Nielsen R, Yang ZH. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level[J]. Mol Biol Evol, 2005, 22(12):2472-2479.
|
Supported by: Beijing Renhe Information Technology Co., Ltd. 
DownLoad: