Citation: | Li Yong-Hong, Qi Mei-Yan, Fang Yuan, Fu An, Wang Xiao-Qin, He Yi-Kun. Functional analysis of PpAux/IAA2 in Physcomitrella patens (Hedw.) Mitt. during protoplast regeneration[J]. Plant Science Journal, 2021, 39(5): 515-525. DOI: 10.11913/PSJ.2095-0837.2021.50515 |
[1] |
Luo J, Zhou JJ, Zhang JZ. Aux/IAA gene family in plants:molecular structure, regulation, and function[J]. Int J Mol Sci, 2018, 19(1):259.
|
[2] |
Perrot-Rechenmann C. Cellular responses to auxin:division versus expansion[J]. Cold Spring Harb Perspect Biol, 2010, 2(5):a001446.
|
[3] |
Li K, Wang S, Wu H, Wang H. Protein levels of several Arabidopsis auxin response factors are regulated by multiple factors and ABA promotes ARF6 protein ubiquitination[J]. Int J Mol Sci, 2020, 21(24):9437.
|
[4] |
Lavy M, Estelle M. Mechanisms of auxin signaling[J]. Development, 2016, 143(18):3226-3229.
|
[5] |
Niemeyer M, Moreno Castillo E, Ihling CH, Iacobucci C, Wilde V, et al. Flexibility of intrinsically disordered degrons in AUX/IAA proteins reinforces auxin co-receptor assemblies[J]. Nat Commun, 2020, 11(1):2277.
|
[6] |
Tiwari SB, Hagen G, Guilfoyle TJ. Aux/IAA proteins contain a potent transcriptional repression domain[J]. Plant Cell, 2004, 16(2):533-543.
|
[7] |
Trenner J, Poeschl Y, Grau J, Gogol-Doring A, Quint M, Delker C. Auxin-induced expression divergence between Arabidopsis species may originate within the TIR1/AFB-AUX/IAA-ARF module[J]. J Exp Bot, 2017, 68(3):539-552.
|
[8] |
Ashton NW, Grimsley NH, Cove DJ. Analysis of gametophytic development in the moss, Physcomitrella patens, using auxin and cytokinin resistant mutants[J]. Planta, 1979, 144(5):427-435.
|
[9] |
Kim SH, Bahk S, An J, Hussain S, Nguyen NT, et al. A gain-of-function mutant of IAA15 inhibits lateral root deve-lopment by transcriptional repression of LBD genes in Arabidopsis[J]. Front Plant Sci, 2020, 11:1239.
|
[10] |
Lavy M, Prigge MJ, Tao S, Shain S, Kuo A, et al. Constitutive auxin response in Physcomitrella reveals complex interactions between Aux/IAA and ARF proteins[J]. Elife, 2016, 5:e13325.
|
[11] |
Prigge MJ, Lavy M, Ashton NW, Estelle M. Physcomitrella patens auxin-resistant mutants affect conserved elements of an auxin-signaling pathway[J]. Curr Biol, 2010, 20(21):1907-1912.
|
[12] |
Birnbaum KD, Sanchez Alvarado A. Slicing across kingdoms:regeneration in plants and animals[J]. Cell, 2008, 132(4):697-710.
|
[13] |
Sugimoto K, Jiao Y, Meyerowitz EM. Arabidopsis regene-ration from multiple tissues occurs via a root development pathway[J]. Dev Cell, 2010, 18(3):463-471.
|
[14] |
Iwase A, Ohme-Takagi M, Sugimoto K. WIND1:a key molecular switch for plant cell dedifferentiation[J]. Plant Signal Behav, 2011, 6(12):1943-1945.
|
[15] |
Zhao J, Morozova N, Williams L, Libs L, Avivi Y, Grafi G. Two phases of chromatin decondensation during dediffe-rentiation of plant cells:distinction between competence for cell fate switch and a commitment for S phase[J]. J Biol Chem, 2001, 276(25):22772-22778.
|
[16] |
Nishiyama T, Miyawaki K, Ohshima M, Thompson K, Nagashima A, et al. Digital gene expression profiling by 5'-end sequencing of cDNAs during reprogramming in the moss Physcomitrella patens[J]. PLoS One, 2012, 7(5):e36471.
|
[17] |
Prigge MJ, Bezanilla M. Evolutionary crossroads in deve-lopmental biology:Physcomitrella patens[J]. Development, 2010, 137(21):3535-3543.
|
[18] |
Ishikawa M, Murata T, Sato Y, Nishiyama T, Hiwatashi Y, et al. Physcomitrella cyclin-dependent kinase A links cell cycle reactivation to other cellular changes during reprogramming of leaf cells[J]. Plant Cell, 2011, 23(8):2924-2938.
|
[19] |
Sakakibara K, Reisewitz P, Aoyama T, Friedrich T, Ando S, et al. WOX13-like genes are required for reprogramming of leaf and protoplast cells into stem cells in the moss Physcomitrella patens[J]. Development, 2014, 141(8):1660-1670.
|
[20] |
Avivi Y, Morad V, Ben-Meir H, Zhao J, Kashkush K, et al. Reorganization of specific chromosomal domains and activation of silent genes in plant cells acquiring pluripotentiality[J]. Dev Dyn, 2004, 230(1):12-22.
|
[21] |
Givaty-Rapp Y, Yadav NS, Khan A, Grafi G. S1-type endonuclease 2 in dedifferentiating Arabidopsis protoplasts:translocation to the nucleus in senescing protoplasts is associated with de-glycosylation[J]. PLoS One, 2017, 12(1):e0170067.
|
[22] |
Grafi G, Avivi Y. Stem cells:a lesson from dedifferentiation[J]. Trends Biotechnol, 2004, 22(8):388-389.
|
[23] |
Wang X, Qi M, Li J, Ji Z, Hu Y, et al. The phosphoproteome in regenerating protoplasts from Physcomitrella patens protonemata shows changes paralleling postembryonic development in higher plants[J]. J Exp Bot, 2014, 65(8):2093-2106.
|
[24] |
Cove DJ, Perroud PF, Charron AJ, McDaniel SF, Khandelwal A, Quatrano RS. The moss Physcomitrella patens:a novel model system for plant development and genomic studies[J]. Cold Spring Harb Protoc, 2009, 2009(2):pdb emo115.
|
[25] |
Widholm JM. The use of fluorescein diacetate and phenosafranine for determining viability of cultured plant cells[J]. Stain Technol, 1972, 47(4):189-194.
|
[26] |
Gu N, Tamada Y, Imai A, Palfalvi G, Kabeya Y, et al. DNA damage triggers reprogramming of differentiated cells into stem cells in Physcomitrella[J]. Nat Plants, 2020, 6(9):1098-1105.
|
[27] |
Geier U, Werner O, Bopp M. Indole-3-acetic acid uptake in isolated protoplasts of the moss Funaria hygrometrica[J]. Physiol Plant, 1990, 80:584-592.
|
[28] |
Tiwari SB, Wang XJ, Hagen G, Guilfoyle TJ. AUX/IAA proteins are active repressors, and their stability and activity are modulated by auxin[J]. Plant Cell, 2001, 13(12):2809-2822.
|
[29] |
Normanly J, Bartel B. Redundancy as a way of life-IAA metabolism[J]. Curr Opin Plant Biol, 1999, 2(3):207-213.
|
[30] |
Ludwig-Muller J, Julke S, Bierfreund NM, Decker EL, Reski R. Moss (Physcomitrella patens) GH3 proteins act in auxin homeostasis[J]. New Phytol, 2009, 181(2):323-338.
|
[31] |
Cooke TJ, Poli D, Sztein AE, Cohen JD. Evolutionary patterns in auxin action[J]. Plant Mol Biol, 2002, 49(3/4):319-338.
|
[32] |
Middleton AM, Dal Bosco C, Chlap P, Bensch R, Harz H, et al. Data-driven modeling of intracellular auxin fluxes indicates a dominant role of the ER in controlling nuclear auxin uptake[J]. Cell Rep, 2018, 22(11):3044-3057.
|
[33] |
Bennett T, Brockington SF, Rothfels C, Graham SW, Stevenson D, et al. Paralogous radiations of PIN proteins with multiple origins of noncanonical PIN structure[J]. Mol Biol Evol, 2014, 31(8):2042-2060.
|
[34] |
Rawat A, Brejskova L, Hala M, Cvrckova F, Zarsky V. The Physcomitrella patens exocyst subunit EXO70.3d has distinct roles in growth and development, and is essential for completion of the moss life cycle[J]. New Phytol, 2017, 216(2):438-454.
|
[35] |
Jurado S, Abraham Z, Manzano C, Lopez-Torrejon G, Pacios LF, Del Pozo JC. The Arabidopsis cell cycle F-box protein SKP2A binds to auxin[J]. Plant Cell, 2010, 22(12):3891-3904.
|
[36] |
Del Pozo JC, Diaz-Trivino S, Cisneros N, Gutierrez C. The balance between cell division and endoreplication depends on E2FC-DPB, transcription factors regulated by the ubiquitin-SCFSKP2A pathway in Arabidopsis[J]. Plant Cell, 2006, 18(9):2224-2235.
|
[37] |
Pasternak T, Lystvan K, Betekhtin A, Hasterok R. From single cell to plants:mesophyll protoplasts as a versatile system for investigating plant cell reprogramming[J]. Int J Mol Sci, 2020, 21(12):4195.
|
[38] |
Tang L, Nogales E, Ciferri C. Structure and function of SWI/SNF chromatin remodeling complexes and mechanistic implications for transcription[J]. Prog Biophys Mol Biol, 2010, 102(2/3):122-128.
|
[39] |
Wu MF, Yamaguchi N, Xiao J, Bargmann B, Estelle M, Sang Y, et al. Auxin-regulated chromatin switch directs acquisition of flower primordium founder fate[J]. Elife, 2015, 4:e09269.
|