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Li Jia, Jiang Bin, Su Ying-Juan, Wang Ting. Structure and phylogenetic analysis of the Pseudotaxus chienii (W. C. Cheng) W. C. Cheng chloroplast genome[J]. Plant Science Journal, 2021, 39(1): 5-13. DOI: 10.11913/PSJ.2095-0837.2021.10005
Citation: Li Jia, Jiang Bin, Su Ying-Juan, Wang Ting. Structure and phylogenetic analysis of the Pseudotaxus chienii (W. C. Cheng) W. C. Cheng chloroplast genome[J]. Plant Science Journal, 2021, 39(1): 5-13. DOI: 10.11913/PSJ.2095-0837.2021.10005
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Structure and phylogenetic analysis of the Pseudotaxus chienii (W. C. Cheng) W. C. Cheng chloroplast genome

  • 1. College of Life Sciences and Food Engineering, Shaanxi Xueqian Normal University, Xi'an 710100, China;

  • 2. College of Life Sciences, Anhui Normal University, Wuhu, Anhui 241000, China;

  • 3. School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China;

  • 4. College of Life Science, South China Agricultural University, Guangzhou 510642, China

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This work was supported by grants from the Science Foundation from the Education Department of Shaanxi Provincial Government (19JK0211), National Natural Science Foundation of China (31770587,31872670), Project of Department of Science and Technology of Shenzhen (JCYJ20190813172001780), and Science and Technology Planning Project of Guangzhou (201804010389).

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  • Received Date: July 22, 2020
  • Revised Date: October 18, 2020
  • Available Online: October 31, 2022
  • Published Date: February 27, 2021
    Graphical Abstract
    • Abstract
  • The complete chloroplast genome sequence of Pseudotaxus chienii (W. C. Cheng) W. C. Cheng was determined in this study. Gene content, genome structure, and repeat sequences were also analyzed. Results revealed that the chloroplast genome did not contain typical inverted repeats. The genome was 130 427 bp in length, containing 83 protein coding, four rRNA, and 29 tRNA genes. Forty-four simple sequence repeat loci and 13 tandem repeats were identified in the chloroplast genome of P. chienii. Phylogenetic analysis supported Taxaceae as sister to Cephalotaxaceae. Within Taxaceae, Pseudotaxus and Taxus formed a monophyletic group, while Torreya and Amentotaxus clustered together. The alignment of eight Taxaceae species showed that the chloroplast genome organization of P. chienii was highly similar to that of Taxus, while rearrangement also existed between different genera of Taxaceae. Thus, these results indicate that chloroplast genome data can better solve the phylogenetic relationships of Taxus plants.
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    • References (37)
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