Advance Search
PENG Chun-Qiao, ZHAO Xue-Li, GAO Xin-Fen. Study on the Population Genetics of Indigofera decora Complex Based on cpDNA and nrDNA ITS Sequences[J]. Plant Science Journal, 2015, 33(4): 425-437. DOI: 10.11913/PSJ.2095-0837.2015.40425
Citation: PENG Chun-Qiao, ZHAO Xue-Li, GAO Xin-Fen. Study on the Population Genetics of Indigofera decora Complex Based on cpDNA and nrDNA ITS Sequences[J]. Plant Science Journal, 2015, 33(4): 425-437. DOI: 10.11913/PSJ.2095-0837.2015.40425
shu

Study on the Population Genetics of Indigofera decora Complex Based on cpDNA and nrDNA ITS Sequences

  • 1.

    Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China

  • 2. University of the Chinese Academy of Sciences, Beijing 100049, China

More Information
  • Received Date: March 24, 2015
  • Published Date: August 27, 2015
    Graphical Abstract
    • Abstract
  • To address questions of interspecific genetic variability and explore the mechanism of speciation in the Indigofera decora complex, a phylogenetic analysis of the complex distributed in eastern and neighboring regions of China was conducted based on cpDNA (ndhJ-trnF and trnD-trnT) and nrDNA (ITS) sequences, including 185 individuals from 24 populations.Results suggested that the Indigofera decora complex had high haplotype diversity and low genetic diversity (cpDNA: Hd=0.778,π=0.00123; ITS: Hd=0.909,π=0.01290).Anhui and Zhejiang were suggested to be the centers of genetic diversity based on the population diversity index.Most genetic variation in the complex was confined to among-population differentiation rather than within-population variation.Intraspecific differentiation among populations was high (cpDNA: FST=0.848; ITS: FST=0.787), while gene flow was low (cpDNA: Nm=0.228; ITS: Nm=0.241), which showed that isolation-by-distance (genetic shift) or habitat fragmentation promoted species diversification of the complex.Incomplete reproduction isolation of the species resulted in shared haplotypes among species by introgression.The populations of I.kirilowii were diverged from other populations and had no shared haplotypes with other species, thus its taxonomic status should be kept.However, further study is needed on the taxonomic status of other species of the complex.
    • FullText(HTML)
    • References (35)
  • [1]
    Davis PH, Heywood VH.Principles of Angiosperm Taxonomy[M].Edinburgh and London: Oliver & Boyd Ltd, 1963.
    [2]
    汤彦承, 王锦秀.在植物考据研究中应用进化思想的探讨[J].云南植物研究, 2009, 31(5): 406-407.
    [3]
    Navarro-Quezada A, González-Chauvet R, Molina-Freaner F, Eguiarte LE.Genetic differentiation in the Agave deserti (Agavaceae) complex of the Sonoran desert[J].Heredity, 2003, 90(3): 220-227.
    [4]
    Guggisberg A, Mansion G, Kelso S, Conti E.Evolution of biogeographic patterns, ploidy levels, and breeding systems in a diploid-polyploid species complex of Primula[J].New Phytol, 2006, 171(3): 617-632.
    [5]
    Liu JQ, Wang YJ, Wang AL, Ohba H, Richard JA.Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Pla-teau[J].Mol Phylogenet Evol, 2006, 38(1): 31-49.
    [6]
    Schmickl R, Paule J, Klein J, Marhold K, Koch MA.The evolutionary history of the Arabidopsis arenosa complex: diverse tetraploids mask the western Carpathian center of species and genetic diversity[J].PLoS One, 2012, 7(8): e42691.
    [7]
    戴琼妍.Smilax hispida复合群北美分支的系统发育和谱系地理学研究[D].杭州: 浙江大学, 2012: 5-8.
    [8]
    Shaw J, Lickey EB, Schilling EE, Beck JT, Armer SBF, Liu W, Miller J, Siripun KC, Winder CT, Sching EE, Small RL.The tortoise and the hare Ⅱ: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis[J]. Am J Bot, 2005, 92(1): 142-166.
    [9]
    Zhang Q, Chiang TY, George M, Liu JQ, Abbott RJ.Phylogeography of the Qinghai-Tibetan Pla-teau endemic Juniperus przewalskii (Cupressaceae) inferred from chloroplast DNA sequence variation[J].Mol Ecol, 2005, 14(11): 3513-3524.
    [10]
    王建波, 张文驹, 陈家宽.核rDNA的ITS序列在被子植物系统与进化研究中的应用[J].植物分类学报, 1999, 37 (4): 407-416.
    [11]
    Gao XF, Schrire BD.Flora of China: Vol.10[M].2010: 137-164.
    [12]
    尹国萍,陈士林,肖小河,陈善镛.中国木蓝属分布式样的数值分析及资源利用[J].广西植物, 1992, 12 (1): 22-32.
    [13]
    徐炳声, 方云亿, 王超, 冯雪舟, 徐连根.庭藤种综内分类群间变异式样的相关性[J].植物研究, 1983, 3(1): 9-23.
    [14]
    陈冬民.论庭藤种综内分类群间的变异相关性与分类地位[J].广西植物, 1985, 5(1): 27-30.
    [15]
    方云亿, 郑朝宗.国产木蓝属的系统研究[J].植物分类学报, 1989, 27(3): 161-177.
    [16]
    方云亿, 郑朝宗.中国植物志: 第40卷[M].北京: 科学出版社, 1994: 261-269.
    [17]
    Schrire BD, Lavin M, Barker NP, Forest F.Phylogeny of the tribe Indigofereae (Leguminosae-Papilionoideae): Geographically structured more in succulent-rich and temperate settings than in grass-rich environments[J].Am J Bot, 2009, 96(4): 816-52.
    [18]
    Shaw J, Lickey EB, Schilling EE, Small RL.Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare Ⅲ[J].Am J Bot, 2007, 94(3): 275-288.
    [19]
    Demesure B, Sodzi N, Petit RJ.A set of universal primers for amplication of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants[J].Mol Ecol, 1995, 4(1): 129-131.
    [20]
    Blattner F.Direct amplification of the entire ITS region from poorly preserved plant material using recombinant PCR[J].Biotechniques, 1999, 27(6): 1180-1186.
    [21]
    White TJ, Bruns T, Lee S, Taylor J.Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics[M]// Innis MA, Geland DH, Sninsky JJ, White TJ, eds.PCR protocols.San Diego: Academic Press, 1990: 315-322.
    [22]
    Librado P, Rozas J.DNASP v5: a software for comprehensive analysis of DNA polymorphism data[J]. Bioinformatics, 2009, 25(11):1451-1452.
    [23]
    Excoffier L, Laval LG, Schneider S.Arlequin ver.3.0: an integrated software package for population genetics data analysis[J].Evol Bioinform, 2005, 1(1): 47-50.
    [24]
    Clement M, Posada D, Crandall K.TCS: a computer program to estimate gene genealogies [J].Mol Ecol, 2000, 9(10): 1657-1660.
    [25]
    Hamrick JL, Loveless MD.The genetic structure of tropical tree populations: Associations with reproductive biology[M]//Bock JH, Linhart YB, eds.The evolutionary ecology of plants.Boulder, Colo:Wcstvicw Press, 1989: 129-146
    [26]
    Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA.Phylogeographic studies in plants: problems and prospects[J]. Mol Ecol, 1998, 7(4): 465-474.
    [27]
    Slatkin M.Gene flow and the geographic structure of natural populations[J].Science, 1987, 236(4803): 787-792.
    [28]
    Zheng XM, Ge S.Ecological divergence in the presence of gene ow in two closely related Oryza species (Oryza rupogon and O.nivara)[J].Mol Ecol, 2010, 19(12): 2439-2454.
    [29]
    Choi BH, Kim JH.ITS sequences and speciation on far eastern Indigofera (Leguminosae)[J].J.Plant Res, 1997, 110(3): 339-346.
    [30]
    Turchetto C, Segatto ALA, Telles MPC, Diniz-Filho JAF, Freitas LB.Infraspecic classication reects genetic differentiation in the widespread Petunia axillaris complex: A comparison among morphological, ecological, and genetic patterns of geographic variation [J].PPEES, 2014, 16(2): 75-82.
    [31]
    杜芳, 徐放.基因流介导的种间渐渗与物种界定[J].植物分类与资源学报, 2012, 4(3): 257-262.
    [32]
    Schaal BA, Olsen KM.Gene genealogies and population variation in plants[J].Proc Natl Acad Sci USA, 2000, 97(13): 7024-7029.
    [33]
    梁琼, 张燕君, 徐艳琴, 黄宏文, 王瑛.箭叶淫羊藿聚群形态及遗传多样性比较研究[J].植物科学学报, 2013, 31(4): 422-427.
    [34]
    Avise JC.Phylogeography: the History and Formation of Species[M].Cambridge: Harvard University Press, 2000.
    [35]
    Casazza G, Granato L, Minuto L, Conti E.Polyploid evolution and Pleistocene glacial cycles: A case study from the alpine primrose Primula marginata (Primulaceae)[J].BMC Evol Biol, 2012, 12(2): 56-70.
    • Related Articles

  • Related Articles

    [1]Li Jin-Ye, Ping Jing-Yao, Cui Gui-Feng, Su Ying-Juan, Wang Ting. Effects of the broken rps2 gene cluster on evolutionary rates in Campanulaceae[J]. Plant Science Journal, 2023, 41(3): 333-342. DOI: 10.11913/PSJ.2095-0837.22231
    [2]Wang Jie, Wei Ai-Li, Shi Ying, Li Yan-Hui, Han Yu-Xin, Wang Zhong-Jie. Adaptive evolutionary analysis of hetR gene in Nostoc[J]. Plant Science Journal, 2020, 38(1): 23-31. DOI: 10.11913/PSJ.2095-0837.2020.10023
    [3]Ping Jing-Yao, Zhu Ming, Su Ying-Juan, Wang Ting. Molecular evolution of chloroplast gene rps12 in ferns[J]. Plant Science Journal, 2020, 38(1): 1-9. DOI: 10.11913/PSJ.2095-0837.2020.10001
    [4]Liang Ying-Yi, Pang Xue-Qun, Wang Ting. Mechanism and evolution of fruit type diversity[J]. Plant Science Journal, 2017, 35(6): 912-924. DOI: 10.11913/PSJ.2095-0837.2017.60912
    [5]Wu Xiao-Ping, Sen Lin, Chen Nan, Zhang Xiao, Ma Zhao-Xia, Zhang Qin-Yu. Study on the molecular evolution of the psaA gene from ferns[J]. Plant Science Journal, 2017, 35(2): 177-185. DOI: 10.11913/PSJ.2095-0837.2017.20177
    [6]XU Ke, WANG Bo, SU Ying-Juan, GAO Lei, WANG Ting. Molecular Evolution of psbD Gene in Ferns：Selection Pressure and Co-evolutionary Analysis[J]. Plant Science Journal, 2013, 31(5): 429-438. DOI: 10.3724/SP.J.1142.2013.50429
    [7]ZHOU Yuan, WANG Bo, GAO Lei, WANG Ting. Adaptive Evolution and Coevolution of the rbcL Gene in Xeric Pteridaceae Ferns[J]. Plant Science Journal, 2011, 1(4): 409-416.
    [8]Wang Chongyun, Dang Chenglin. PLANT MATING SYSTEM AND ITS EVOLUTIONARY MECHANISM IN RELATION TO POPULATION ADAPTATION[J]. Plant Science Journal, 1999, 17(2): 163-172.
    [9]Xu Naiyu. THE TAXONOMY,ORIGIN AND EVOLUTION OF WHEAT[J]. Plant Science Journal, 1988, 6(2): 187-194.
    [10]Wang Jinwu, Li Maoxue, Li Lixia. STUDIES ON THE CYTOTAXONOMY OF POLYGONATUM Ⅰ.Karyotypes and evolution of eight species of Polygonatum in China[J]. Plant Science Journal, 1987, 5(1): 1-10.

  • Cited by

    Periodical cited type(7)

    1. 席欧彦，王晨日，古丽奴尔·吐拉西，胡红英. 伊犁河谷野果林传粉昆虫物种多样性及访花行为特征. 新疆农业科学. 2024(01): 190-198 .
    2. 管岳，申文靖，陆彪，王妍欣，阿克居力得孜·努尔改里得，周龙. 塔额盆地野果林不同居群野扁桃土壤种子库及幼苗更新研究. 西北植物学报. 2024(06): 961-967 .
    3. 热依汉古丽·夏迪，杨蕾，如马南木·尼合买提，贾贤德，巫利梅，吕海英. 西天山野果林准噶尔山楂土壤种子库海拔梯度分布格局. 植物科学学报. 2023(02): 172-182 . 本站查看
    4. 李波，赵阳，刘婷，陈学龙，高本强，曹秀文. 洮河上游紫果云杉群落土壤种子库特征及其与地上植被的关系. 西北植物学报. 2022(04): 705-714 .
    5. 冯琳骄，褚佳瑶，孟雨欣，周龙，陆彪. 不同居群天山樱桃土壤种子库与幼苗更新特征. 中南林业科技大学学报. 2022(12): 91-97 .
    6. 尚志福，郑友琪，张济显，位竹君，张北方，张莹. 金花小檗种子总黄酮的优化提取及抗氧化活性. 特产研究. 2021(05): 75-80 .
    7. 陈本学，李雁冰，范少辉，刘广路，申景昕. 海南甘什岭白藤土壤种子库特征及幼苗更新能力. 生态学杂志. 2020(04): 1091-1100 .

    Other cited types(4)

Catalog

    Get Citation
    PDF
    XML
    Article views (1403) PDF downloads (1454) Cited by(11)
    Turn off MathJax
    Article Contents
    Abstract
    References
    Related Articles
    Copyright © 2022 Plant Science Journal 鄂ICP备05004779号-3
    Address：No. 201, Jiufeng 1st Road, Donghu High tech Zone, WuhanPostal Code：430074

    Supported by: Beijing Renhe Information Technology Co., Ltd.  Baidu Analytics

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return