Key factors of <i>Miscanthus lutarioriparius</i> L. Liu ex Renvoize & S. L. Chen local adaptation based on population transcriptomes

Qiao Ni-Qin; Xing Shi-Lai; Song Zhi-Hong; Yi Zi-Li; Yan Juan

doi:10.11913/PSJ.2095-0837.2020.60795

Plant Science Journal > 2020 > 38(6): 795-801. > DOI: 10.11913/PSJ.2095-0837.2020.60795 CSTR: 32231.14.PSJ.2095-0837.2020.60795

Qiao Ni-Qin, Xing Shi-Lai, Song Zhi-Hong, Yi Zi-Li, Yan Juan. Key factors of Miscanthus lutarioriparius L. Liu ex Renvoize & S. L. Chen local adaptation based on population transcriptomes[J]. Plant Science Journal, 2020, 38(6): 795-801. DOI: 10.11913/PSJ.2095-0837.2020.60795

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Key factors of Miscanthus lutarioriparius L. Liu ex Renvoize & S. L. Chen local adaptation based on population transcriptomes

1. College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha 410128, China;
2. Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;
3. Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China

Funds:

This work was supported by grants from the National Natural Science Foundation of China (31971566) and Chinese Academy of Sciences Youth Innovation Promotion Association (Y829281G02).

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Received Date: March 22, 2020
Revised Date: April 07, 2020
Available Online: October 31, 2022
Published Date: December 27, 2020

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Abstract

Abstract

Based on population transcriptomic data of 10 representative populations of Miscanthus lutarioriparius, we studied the key factors impacting local adaptations of the species. We used single nucleotide polymorphisms (SNPs) to phase haplotypes and analyze differentially expressed genes among environments and inferred haplotypes. These genes were then classified into four categories: those significantly affected by the environment (E), significantly affected by haplotypes (G), significantly affected by environmental and haplotype interactions (G & E), and not significantly affected. Based on further analysis, the G & E and E gene sets played importance roles in the local population. The gene expression of G & E was more sensitive to other factors, while the E gene set of was relatively stable. The former was significantly enriched in ribosomal pathway-related functional genes, and the latter was significantly enriched in protein folding-related functional genes. These functional genes were involved in responses to external pressure. Therefore, we inferred that the differential expression of these genes was mainly affected by the environment and the interaction between genotypes and the environment.
- Miscanthus,
- Transcriptome,
- Phased haplotype,
- Local adaptation

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References (33)

References

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